Amber
Description Amber is a suite of biomolecular simulation programs. The term “Amber” refers to two things. First, it is a set of molecular mechanical force fields for the simulation of… Read more »
Tag: Biology
ANTs
AddNoiseToImage CreateTiledMosaic ANTS CreateWarpedGridImage antsAffineInitializer DenoiseImage antsAI DeNrrd antsAlignOrigin ExtractRegionFromImage antsApplyTransforms ExtractRegionFromImageByMask antsApplyTransformsToPoints ExtractSliceFromImage antsASLProcessing.sh FitBSplineToPoints antsAtroposN4.sh etConnectedComponentsFeatureImages antsBOLDNetworkAnalysis.R ImageCompare antsBrainExtraction.sh ImageIntensityStatistics antsCorticalThickness.sh ImageMath ANTSIntegrateVectorField ImageSetStatistics ANTSIntegrateVelocityField iMath antsIntermodalityIntrasubject.sh KellyKapowski… Read more »
DSI Studio
Description DSI Studio is a tractography software for diffusion MRI, fiber tracking, and connectome analysis. The software maps brain connections and links the results to neuropsychological disorders. It is a… Read more »
FreeSurfer
Description FreeSurfer is a software package for neuroanatomical analysis of structural MRI, brain segmentation, and cortical surface reconstruction. It automatically extracts cortical thickness, subcortical structure volumes, and cortical morphology. It… Read more »
FSL – FMRIB
2to3, 2to3-3.12, acyclic, addr2line, adig, aff2rigid, ahost, AnatomicalAverage, androiddeployqt6, annotate, aomdec, aomenc, applytopup, applywarp, ApplyXFM, applyxfm4D, ApplyXFM_gui, ar, as, aserver, asl_calib, asl_file, asl_gui, asl_mfree, asl_reg, asn1Coding, asn1Decoding, asn1Parser, assistant, assistant6,… Read more »