Amber
Description Amber is a suite of biomolecular simulation programs. The term “Amber” refers to two things. First, it is a set of molecular mechanical force fields for the simulation of… Read more »
Category: Softs
ANTs
AddNoiseToImage CreateTiledMosaic ANTS CreateWarpedGridImage antsAffineInitializer DenoiseImage antsAI DeNrrd antsAlignOrigin ExtractRegionFromImage antsApplyTransforms ExtractRegionFromImageByMask antsApplyTransformsToPoints ExtractSliceFromImage antsASLProcessing.sh FitBSplineToPoints antsAtroposN4.sh etConnectedComponentsFeatureImages antsBOLDNetworkAnalysis.R ImageCompare antsBrainExtraction.sh ImageIntensityStatistics antsCorticalThickness.sh ImageMath ANTSIntegrateVectorField ImageSetStatistics ANTSIntegrateVelocityField iMath antsIntermodalityIntrasubject.sh KellyKapowski… Read more »
apptainer
Appendix
Autoconf
Description Autoconf is a tool that automatically generates portable configuration scripts for software. It analyzes the system environment (compiler, libraries, available options, etc.) to create a configure script that allows… Read more »
Automake
Description Automake is a tool that automatically generates portable Makefile files for software. It uses Makefile templates (called Makefile.am) and creates standard Makefiles that comply with GNU conventions and can… Read more »
Blender
Batch mode blender -b your_scene.blend -o video_output.avi -s 0 -e 250 -t 16 -a
Boost
ml boost/1.89.0
cmake
ml utils/cmake # alias 4.1.2 versionouml utils/cmake/4.1.1
COMSOL Multiphysics
Description COMSOL Multiphysics is a numerical simulation software based on the Finite Element Method (FEM), used to model and analyze multidisciplinary physical phenomena. It enables the simulation of interactions across… Read more »