Category: Softs

FSL – FMRIB

2to3, 2to3-3.12, acyclic, addr2line, adig, aff2rigid, ahost, AnatomicalAverage, androiddeployqt6, annotate, aomdec, aomenc, applytopup, applywarp, ApplyXFM, applyxfm4D, ApplyXFM_gui, ar, as, aserver, asl_calib, asl_file, asl_gui, asl_mfree, asl_reg, asn1Coding, asn1Decoding, asn1Parser, assistant, assistant6,… Read more »

ANTs

AddNoiseToImage CreateTiledMosaic ANTS CreateWarpedGridImage antsAffineInitializer DenoiseImage antsAI DeNrrd antsAlignOrigin ExtractRegionFromImage antsApplyTransforms ExtractRegionFromImageByMask antsApplyTransformsToPoints ExtractSliceFromImage antsASLProcessing.sh FitBSplineToPoints antsAtroposN4.sh etConnectedComponentsFeatureImages antsBOLDNetworkAnalysis.R ImageCompare antsBrainExtraction.sh ImageIntensityStatistics antsCorticalThickness.sh ImageMath ANTSIntegrateVectorField ImageSetStatistics ANTSIntegrateVelocityField iMath antsIntermodalityIntrasubject.sh KellyKapowski… Read more »

R (Stat)

To install some « packages » as user mkdir -p ~/R/libs -> to create directory in your user spaceand do “.libPaths(“~/R/libs”)” in R (interractive mode)or/and put “.libPaths(“~/R/libs”)” in ~/.Rprofile to… Read more »

Matlab

Link explaining the ‘Campus License’ Description MATLAB, an acronym for “MATrix LABoratory,” is a numerical computing and programming software developed by MathWorks. It is widely used in the fields of… Read more »

Sage

Description Sage is a powerful and versatile open-source mathematical software designed for mathematicians and researchers. It provides a wide range of tools for performing symbolic and numerical computations, solving problems… Read more »

Guix

Guix is a functional package manager and configuration management system for the GNU operating system. It enables the reproducible installation and management of software through immutable packages and declarative configuration… Read more »

Gromacs

Last installed version : 2023.3 Description GROMACS, which stands for “GROningen MAchine for Chemical Simulations,” is widely used molecular simulation software in the fields of computational chemistry, biochemistry, and biophysics…. Read more »

NCCL

Description The NVIDIA Collective Communication Library (NCCL) implements multi-GPU and multi-node communication primitives optimized for NVIDIA GPUs and Networking. NCCL provides routines such as all-gather, all-reduce, broadcast, reduce, reduce-scatter as… Read more »