Author Archives: Laurent Renault

apptainer

Installed version : 1.4.1 Provides : apptainer, singularity Site Environment setup: Appendix

FSL – FMRIB

2to3, 2to3-3.12, acyclic, addr2line, adig, aff2rigid, ahost, AnatomicalAverage, androiddeployqt6, annotate, aomdec, aomenc, applytopup, applywarp, ApplyXFM, applyxfm4D, ApplyXFM_gui, ar, as, aserver, asl_calib, asl_file, asl_gui, asl_mfree, asl_reg, asn1Coding, asn1Decoding, asn1Parser, assistant, assistant6,… Read more »

ANTs

AddNoiseToImage CreateTiledMosaic ANTS CreateWarpedGridImage antsAffineInitializer DenoiseImage antsAI DeNrrd antsAlignOrigin ExtractRegionFromImage antsApplyTransforms ExtractRegionFromImageByMask antsApplyTransformsToPoints ExtractSliceFromImage antsASLProcessing.sh FitBSplineToPoints antsAtroposN4.sh etConnectedComponentsFeatureImages antsBOLDNetworkAnalysis.R ImageCompare antsBrainExtraction.sh ImageIntensityStatistics antsCorticalThickness.sh ImageMath ANTSIntegrateVectorField ImageSetStatistics ANTSIntegrateVelocityField iMath antsIntermodalityIntrasubject.sh KellyKapowski… Read more »

R (Stat)

To install some « packages » as user mkdir -p ~/R/libs -> to create directory in your user spaceand do “.libPaths(“~/R/libs”)” in R (interractive mode)or/and put “.libPaths(“~/R/libs”)” in ~/.Rprofile to… Read more »