• Version installée : 6.0.7.17
• Site
• Mise en place de l’environnement :

ml bio/fsl

• Liste des commandes possibles :

2to3, 2to3-3.12, acyclic, addr2line, adig, aff2rigid, ahost, AnatomicalAverage, androiddeployqt6, annotate, aomdec, aomenc, applytopup, applywarp, ApplyXFM, applyxfm4D, ApplyXFM_gui, ar, as, aserver, asl_calib, asl_file, asl_gui, asl_mfree, asl_reg, asn1Coding, asn1Decoding, asn1Parser, assistant, assistant6, atlasq, atlasquery, attr, autoaq, autopoint, avscale, avw2fsl, aws, aws_bash_completer, aws.cmd, aws_completer,
aws_zsh_completer.sh, b0calc, balsam, bash, bashbug, basil, basil_var, basis_tools, baycest, bcomps, bdftogd, bedpost, bedpostx, bedpostx_datacheck,
bedpostx_gpu, bedpostx_postproc_gpu.sh, bedpostx_postproc.sh, bedpostx_preproc.sh, bedpostx_single_slice.sh, bet, Bet, bet2, bet4animal, Bet_gui,
betsurf, bianca, bianca_cluster_stats, bianca_overlap_measures, bianca_perivent_deep, bokeh, brotli, bruker, bunzip2, bzcat, bzcmp, bzdiff, bzegrep,
bzfgrep, bzgrep, bzip2, bzip2recover, bzless, bzmore, c++, cairo-trace, calc_grad_perc_dev, canbusutil, captoinfo, cbrunsli, cc, ccomps, ccops, cct,
certtool, certutil, c++filt, checkFEAT, circo, cjpeg, clear, cllayerinfo, cluster, cluster2html, compile_et, concat_bvars, ConcatXFM, ConcatXFM_gui,
connectedcomp, contrast_mgr, convert_fix_model, convertwarp, convert_xfm, cpp, cpuinfo, create_blueprint, create_lut, c_rehash, cs2cs, csv2rdf,
csv-import, cups-config, curl-config, curve_keygen, cutoffcalc, cwebp, dash-generate-components, dash-update-components, dask, dask-scheduler,
dask-ssh, dask-worker, dav1d, dbrunsli, dbus-cleanup-sockets, dbus-daemon, dbus-launch, dbus-monitor, dbus-run-session, dbus-send, dbus-test-tool,
dbus-update-activation-environment, dbus-uuidgen, dcm2niix, dcm-dump, dcm-getframe, debugpy, debugpy-adapter, delaunay, derb, designer, designer6,
design_ttest2, diffimg, dijkstra, distancemap, djpeg, dot, dot2gxl, dot_builtins, drawmesh, dtifit, dtigen, dual_regression, dwebp, dwp, easythresh,
eddy, eddy_combine, eddy_correct, eddy_cpu, eddy_cuda10.2, eddy_quad, eddy_squad, edgepaint, elasticurl, elasticurl_cpp, elastipubsub, elastipubsub5,
elfedit, envsubst, epi_reg, estnoise, exr2aces, exrenvmap, exrheader, exrinfo, exrmakepreview, exrmaketiled, exrmultipart, exrmultiview, exrstdattr,
extractfidparams, extracttxt, f2py, fabber, fabber_asl, fabber_cest, fabber_dce, fabber_dsc, fabber_dualecho, fabber_dwi, fabber_pet, fabber_qbold,
fabber_t1, fabber_var, fast, Fast, Fast_gui, fc-cache, fc-cat, fc-conflist, fc-list, fc-match, fc-pattern, fc-query, fc-scan, fc-validate, fdp, fdr,
Fdt, Fdt_gui, fdt_matrix_merge, fdt_rotate_bvecs, feat, Feat, feat_gm_prepare, Feat_gui, feat_model, featquery, Featquery, Featquery_gui,
featregapply, ffmpeg, ffprobe, fftwf-wisdom, fftwl-wisdom, fftw-wisdom, fftw-wisdom-to-conf, file-tree, filetype, filmbabe, filmbabescript,
film_cifti, film_gls, find_cuda_exe, find_the_biggest, first, first3Dview, first_boundary_corr, first_flirt, first_mult_bcorr, first_roi_slicesdir,
first_utils, fix, fixqt4headers.pl, flac, flameo, flask, flirt, Flirt, flirt_average, Flirt_gui, fmrib_unpack, fmrib_unpack_demo, fmrs_stats, fnirt,
fnirtfileutils, fonttools, freetype-config, fribidi, fsl, fsl2ascii, fsl_abspath, fsladd, fsl_add_module, fsl_anat, fslanimate, fsl_apply_x5,
fslascii2img, fsl_boxplot, fslcc, fslchfiletype, fslchfiletype_exe, fslchpixdim, fsl-cluster, fslcomplex, fsl_convert_x5, fslcpgeom, fslcreatehd,
fsl_deface, fsl_dynmrs, fslecho, fsledithd, fsl_ents, fslerrorreport, fsleyes, fsleyes_unfiltered, fslfft, fslFixText, fsl_gen_3D,
fsl_generate_module_manifest, fsl_get_standard, fsl_glm, fsl_gui, fslhd, fsl_histogram, fslinfo, fslinterleave, fslipython, fslmaths, fslmeants,
fslmerge, fslmodhd, fsl_motion_outliers, fsl_mrs, fsl_mrsi, fsl_mrs_preproc, fsl_mrs_preproc_edit, fsl_mrs_proc, fsl_mrs_sim, fsl_mrs_summarise,
fsl_mrs_verify, fsl_mvlm, fslnotebook, fslnvols, fslorient, fsl_prepare_fieldmap, Fsl_prepare_fieldmap, Fsl_prepare_fieldmap_gui, fslpspec,
fslpython, fslpythonw, fsl_reg, fsl_regfilt, fslreorient2std, fslroi, fsl_sbca, fsl_schurprod, fslselectvols, fslsize, fslslice, fslsmoothfill,
fslsplit, fslstats, fsl_sub, fsl_sub_config, fsl_sub_plugin, fsl_sub_report, fsl_sub_update, fslsurfacemaths, fslswapdim, fslswapdim_exe, fsltclsh,
fsl_tsplot, fslval, fslvbm_1_bet, fslvbm_2_template, fslvbm_3_proc, fslversion, fslwish, ftoz, fugue, futurize, g++, gapplication, gc, gcc, gcc-ar,
gcc-nm, gcc-ranlib, gcov, gcov-dump, gcov-tool, gd2copypal, gd2togif, gd2topng, gdbus, gdbus-codegen, gdcmpgif, gdk-pixbuf-csource,
gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders, gdk-pixbuf-thumbnailer, gdparttopng, gdtopng, genbrk, gencfu, gencnval, gendict, generate_b0,
generate_b0calc, generate_brain, generateConfounds, genrb, geod, getfattr, get_gprof, get_objgraph, gettext, gettextize, gettext.sh, get_wgb,
gflags_completions.sh, gi-compile-repository, gi-decompile-typelib, gie, gif2h5, gif2hdf, gif2rgb, gif2webp, gifbuild, gifclrmp, giffix, giftext,
giftogd2, giftool, gi-inspect-typelib, gio, gio-querymodules, glewinfo, glib-compile-resources, glib-compile-schemas, glib-genmarshal,
glib-gettextize, glib-mkenums, Glm, Glm_gui, gml2gv, gnutls-cli, gnutls-cli-debug, gnutls-serv, gobject-query, gold, gpg-error, gpgrt-config, gprof,
gps, graphml2gv, gresource, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin,
grpc_ruby_plugin, gsettings, gss-client, gst-device-monitor-1.0, gst-discoverer-1.0, gst-inspect-1.0, gst-launch-1.0, gst-play-1.0, gst-stats-1.0,
gst-typefind-1.0, gtester, gtester-report, gtk-builder-convert, gtk-builder-tool, gtk-demo, gtk-encode-symbolic-svg, gtk-launch,
gtk-query-immodules-2.0, gtk-query-immodules-3.0, gtk-query-settings, gtk-update-icon-cache, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare,
gts-config, gtstemplate, gv2gml, gv2gxl, gvcolor, gvgen, gvmap, gvmap.sh, gvpack, gvpr, gxl2dot, gxl2gv, h264dec, h264enc, h4cc, h4_ncdump, h4_ncgen,
h4redeploy, h52gif, h5c++, h5cc, h5clear, h5copy, h5debug, h5delete, h5diff, h5dump, h5fc, h5format_convert, h5fuse.sh, h5import, h5jam, h5ls,
h5mkgrp, h5perf_serial, h5redeploy, h5repack, h5repart, h5stat, h5tools_test_utils, h5unjam, h5watch, halfcosbasis, hb-info, hb-ot-shape-closure,
hb-shape, hb-subset, hb-view, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp, hdfed, hdfimport, hdfls, hdfpack, hdftopal, hdftor8, hdfunpac, hdiff,
hdp, helpviewer, hist2prob, hrepack, httpx, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib,
hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, icu-config, icuexportdata, icuinfo, idle3, idle3.12, idn2,
imagecodecs, imageio_download_bin, imageio_remove_bin, imcp, img2imgcoord, img2png, img2py, img2stdcoord, img2webp, img2xpm, imgcmp, imginfo, imglob,
imln, immv, imrm, imtest, infocmp, infotocap, InvertXFM, InvertXFM_gui, invfeatreg, invgeod, invproj, invwarp, ippeveprinter, ipptool, ipython,
ipython3, itkTestDriver, jasper, jiv, jlpm, jpeg2hdf, jpegtran, jpgicc, jp.py, jsonpointer, jsonschema, jupyter, jupyter-dejavu, jupyter-events,
jupyter-execute, jupyter-kernel, jupyter-kernelspec, jupyter-lab, jupyter-labextension, jupyter-labhub, jupyter-migrate, jupyter-nbclassic,
jupyter-nbclassic-bundlerextension, jupyter-nbclassic-extension, jupyter-nbclassic-serverextension, jupyter-nbconvert, jupyter-notebook, jupyter-run,
jupyter-server, jupyter-troubleshoot, jupyter-trust, JxrDecApp, JxrEncApp, k5srvutil, kadmin, kdestroy, keyctl, kinit, klist, kpasswd, krb5-config,
ksu, kswitch, ktutil, kvno, label2surf, lame, lconvert, ld, ld.bfd, ld.gold, lesion_filling, libdeflate-gunzip, libdeflate-gzip, libpng16-config,
libpng-config, linguist, linguist6, linkicc, lprodump, lrelease, lrelease-pro, lsm2bin, lstopo, lstopo-no-graphics, lupdate, lupdate-pro, lz4, lz4c,
lz4cat, lzcat, lzcmp, lzdiff, lzegrep, lzfgrep, lzgrep, lzless, lzma, lzmadec, lzmainfo, lzmore, mainfeatreg, make, make_bianca_mask, makeconv,
make_dyadic_vectors, Make_flobs, Make_flobs_gui, makerot, make_subcort_bp, markdown-it, maskdyads, match_smoothing, mccutup, mcflirt, mean,
medianfilter, melodic, Melodic, merge_mrs_reports, merge_parts_gpu, meshdebug, metaflac, micromamba, midtrans, mist, mist_1_train, mist_2_fit,
mist_display, mist_FA_reg, mist_mesh_utils, mm, mm2gv, mmorf, moc, morph_kernel, mp_diffpow.sh, mpg123, mpg123-id3dump, mpg123-strip, mqtt5_app,
mqtt5_canary, mqtt5canary, mrsi_segment, mrs_tools, msgattrib, msgcat, msgcmp, msgcomm, msgconv, msgen, msgexec, msgfilter, msgfmt, msggrep, msginit,
msgmerge, msgunfmt, msguniq, msm, msmapplywarp, msm_metric_sim, msmresample, mvntool, nc-config, nccopy, ncdump, ncgen, ncgen3, ncurses6-config,
ncursesw6-config, neato, nettle-hash, nettle-lfib-stream, nettle-pbkdf2, ngettext, nghttp, nghttpd, nghttpx, nib-conform, nib-convert, nib-dicomfs,
nib-diff, nib-ls, nib-nifti-dx, nib-roi, nib-stats, nib-tck2trk, nib-trk2tck, nidmfsl, nidm_mkda_convert, nidmreader, nidmresults, nm, nop,
normalizer, nspr-config, nss-config, Nudge, Nudge_gui, numba, objcopy, objdump, ocsptool, old_betall, opencv_annotation,
opencv_interactive-calibration, opencv_model_diagnostics, opencv_version, opencv_visualisation, opencv_waldboost_detector, open_fsl_report,
openslide-quickhash1sum, openslide-show-properties, openslide-write-png, openssl, opj_compress, opj_decompress, opj_dump, orc-contents, orc-memory,
orc-metadata, orc-scan, orc-statistics, osage, out123, overlay, oxford_asl, oxford_asl_hadamard_decode, oxford_asl_roi_stats, p11-kit, p11tool,
pacat, pactl, padsp, pa-info, pairreg, paltohdf, pamon, pango-list, pango-segmentation, pango-view, paplay, parec, parecord, parrec2nii, pasteurize,
patchwork, pcre2-config, pcre2grep, pcre2test, perfusion_subtract, pg_config, pip, pip3, pixeltool, pixeltool6, pk12util, pkcs1-conv, pkg-config,
pkg-config.bin, pkgdata, pngappend, pngfix, png-fix-itxt, pngtogd, pngtogd2, Pnm, pnm_evs, Pnm_gui, pnm_stage1, pointflirt, popp, possum, Possum,
Possum_gui, possum_interpmot.py, possum_matrix, possum_plot.py, possum_sum, possumX, possumX_postproc.sh, prelude, prewhiten, probtrack, probtrackx,
probtrackx2, probtrackx2_gpu, probtrackx2_gpu10.2, progressbar, proj, projinfo, projsync, proj_thresh, protoc, protoc-25.3.0, prov-compare,
prov-convert, prune, psicc, psktool, pt2to3, ptdump, ptoz, ptrepack, pttree, pulse, pvmfit, pybabel, pycrust, pydicom, pydoc, pydoc3, pydoc3.12,
pyfeeds, pyftmerge, pyftsubset, pygmentize, pyjson5, pylupdate5, pyrcc5, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign,
pyrsa-verify, pyshell, pyslices, pyslicesshell, python, python3, python3.1, python3.12, python3.12-config, python3-config, pyuic5, pywxrc, qboot,
qboot_parallel, qboot_postproc.sh, qboot_preproc.sh, qcollectiongenerator, qdbus, qdbus6, qdbuscpp2xml, qdbusviewer, qdbusviewer6, qdbusxml2cpp,
qdistancefieldgenerator, qdistancefieldgenerator6, qdoc, qdoc6, qgltf, qhelpgenerator, qlalr, qmake, qmake6, qml, qml6, qmlcachegen, qmleasing,
qmleasing6, qmlformat, qmlimportscanner, qmllint, qmlls6, qmlmin, qmlplugindump, qmlpreview, qmlpreview6, qmlprofiler, qmlscene, qmlscene6,
qmltestrunner, qmltime, qmltyperegistrar, qscxmlc, qt6.conf, qtattributionsscanner, qt.conf, qtdiag, qtdiag6, qtpaths, qtplugininfo, qtplugininfo6,
quasil, qvkgen, r8tohdf, randomise, randomise_parallel, ranlib, rav1e, rcc, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, rdjpgcom, readelf,
recode-sr-latin, remove_ext, render, renderer, renderhighres, Renderhighres, Renderhighres_gui, Renderstats, repc, resample_image, reset,
results_to_spectrum, ristosds, rmsdiff, robustfov, rst2html4.py, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py, rst2odt_prepstyles.py,
rst2odt.py, rst2pseudoxml.py, rst2s5.py, rst2xetex.py, rst2xml.py, rstpep2html.py, rsvg-convert, run_first, run_first_all, run_mesh_utils, Runtcl,
sccmap, sclient, select_dwi_vols, selfintersection, send2trash, setfattr, setFEAT, setup_masks, setup_vars_opencv4.sh, sexp-conv, sfdp, siena,
siena_cal, siena_diff, siena_flirt, siena_flow2std, sienax, sigloss, signal2image, sim_client, sip-build, sip-distinfo, sip-install, sip-module,
sip-sdist, sip-wheel, size, skivi, sliceanimate, slicer, slices, slicesdir, slicesmask, slices_summary, slicetimer, slidetool, smoothest,
sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set,
sndfile-play, sndfile-salvage, spec2nii, spharm_rm, split_parts_gpu, sqlite3, sqlite3_analyzer, srptool, standard_space_roi, std2imgcoord, stl2gts,
strings, strip, surf2surf, surf2volume, surface_fdr, surfmaths, surf_proj, susan, Susan, Susan_gui, svs_segment, SvtAv1DecApp, SvtAv1EncApp,
swap_subjectwise, swap_voxelwise, swe, syncqt.pl, systemnoise, tabs, tbss_1_preproc, tbss_2_reg, tbss_3_postreg, tbss_4_prestats, tbss_deproject,
tbss_fill, tbss_non_FA, tbss_skeleton, tbss_sym, tbss_x, tcalc, tclsh, tclsh8.6, tensor_average, Text2Vest, tic, tiff2fsspec, tiffcomment, tiffcp,
tiffdump, tifffile, tiffinfo, tiffset, tiffsplit, tificc, timezone-dump, tirl, tjbench, tmpnam, toast, toe, topup, tput, tqdm, tracegen, transform,
transicc, tred, trimesh, trust, tset, tsplot, ttologp, ttoz, ttx, twopi, uic, unconfound, undill, unflatten, unlz4, unlzma, unxz, unzstd,
updatefeatreg, update_fsl_package, update_fsl_release, uuclient, vecreg, verbena, Vest2Text, viena_createpng, viena_quant, visualinfo, vmake, vpxdec,
vpxenc, vshow, vtkParseJava-9.3, vtkProbeOpenGLVersion-9.3, vtkpython, vtkWrapHierarchy-9.3, vtkWrapJava-9.3, vtkWrapPython-9.3,
vtkWrapPythonInit-9.3, wayland-scanner, webpinfo, webpmux, webpng, wheel, whirlgif, wire, wish, wish8.6, wpng, wrjpgcom, wsdump, wx-config, wxdemo,
wxdocs, wxget, wxrc, wxrc-3.2, x264, x265, x86_64-conda_cos6-linux-gnu-addr2line, x86_64-conda_cos6-linux-gnu-ar, x86_64-conda_cos6-linux-gnu-as,
x86_64-conda_cos6-linux-gnu-c++filt, x86_64-conda_cos6-linux-gnu-dwp, x86_64-conda_cos6-linux-gnu-elfedit, x86_64-conda_cos6-linux-gnu-gprof,
x86_64-conda_cos6-linux-gnu-ld, x86_64-conda_cos6-linux-gnu-ld.bfd, x86_64-conda_cos6-linux-gnu-ld.gold, x86_64-conda_cos6-linux-gnu-nm,
x86_64-conda_cos6-linux-gnu-objcopy, x86_64-conda_cos6-linux-gnu-objdump, x86_64-conda_cos6-linux-gnu-ranlib, x86_64-conda_cos6-linux-gnu-readelf,
x86_64-conda_cos6-linux-gnu-size, x86_64-conda_cos6-linux-gnu-strings, x86_64-conda_cos6-linux-gnu-strip, x86_64-conda-linux-gnu-addr2line,
x86_64-conda-linux-gnu-ar, x86_64-conda-linux-gnu-as, x86_64-conda-linux-gnu-c++, x86_64-conda-linux-gnu-c89, x86_64-conda-linux-gnu-c99,
x86_64-conda-linux-gnu-cc, x86_64-conda-linux-gnu.cfg, x86_64-conda-linux-gnu-c++filt, x86_64-conda-linux-gnu-cpp, x86_64-conda-linux-gnu-dwp,
x86_64-conda-linux-gnu-elfedit, x86_64-conda-linux-gnu-g++, x86_64-conda-linux-gnu-gcc, x86_64-conda-linux-gnu-gcc-ar, x86_64-conda-linux-gnu-gcc-nm,
x86_64-conda-linux-gnu-gcc-ranlib, x86_64-conda-linux-gnu-gcov, x86_64-conda-linux-gnu-gcov-dump, x86_64-conda-linux-gnu-gcov-tool,
x86_64-conda-linux-gnu-gprof, x86_64-conda-linux-gnu-ld, x86_64-conda-linux-gnu-ld.bfd, x86_64-conda-linux-gnu-ld.gold, x86_64-conda-linux-gnu-nm,
x86_64-conda-linux-gnu-objcopy, x86_64-conda-linux-gnu-objdump, x86_64-conda-linux-gnu-pkg-config, x86_64-conda-linux-gnu-ranlib,
x86_64-conda-linux-gnu-readelf, x86_64-conda-linux-gnu-size, x86_64-conda-linux-gnu-strings, x86_64-conda-linux-gnu-strip, xfibres, xfibres_gpu,
xfibres_gpu10.2, xgettext, xkbcli, xml2-config, xmlcatalog, xmllint, xmlpatterns, xmlpatternsvalidator, xmlwf, xnat, xnat_cp_project,
xnat_data_integrity-check, xslt-config, xsltproc, xtract, xtract_blueprint, xtract_divergence, xtract_qc, xtract_stats, xtract_viewer, xz, xzcat,
xzcmp, xzdec, xzdiff, xzegrep, xzfgrep, xzgrep, xzless, xzmore, yat2m, zeropad, zfp, zipcmp, zipmerge, ziptool, zopfli, zopflipng, zstd, zstdcat,
zstdgrep, zstdless, zstdmt, ztop