GEC

• B. Bouvier, ‘Substituted oligosaccharides as protein mimics: deep learning free energy landscapes‘, Journal of Chemical Information and Modeling, 2023
• M. Adélaïde, E. Salnikov, F. Ramos-Martin, C. Aisenbrey, C. Sarazin, B. Bechinger, N. D’Amelio, ‘The Mechanism of Action of SAAP-148 Antimicrobial Peptide as Studied with NMR and Molecular Dynamics Simulations‘, Pharmaceutics, Volume 15, 2023
• N. Rodriguez-Moraga, F. Ramos-Martin, S. Buchoux, S. Rippa, N. D’Amelio, C. Sarazin, ‘The effect of rhamnolipids on fungal membrane models as described by their interactions with phospholipids and sterols: An in silico study‘, Frontiers in Chemistry, 2023
• F. Ramos-Martin, C. Herrera-Leon, N. D’Amelio, ‘Bombyx mori Cecropin D could trigger cancer cell apoptosis by interacting with mitochondrial cardiolipin‘, Biochimica et Biophysica Acta (BBA) – Biomembranes, Volume 1864, 2022
• C. Herrera-Leon, F. Ramos-Martin, H. El Btaouri, V. Antonietti, P. Sonnet, L. Martiny, F. Zevolini, C. Falciani, C. Sarazin, N. D’Amelio, ‘The Influence of Short Motifs on the Anticancer Activity of HB43 Peptide‘, Pharmaceutics, Volume 14, 2022
• F. Ramos-Martin, C. Herrera-Leon, V. Antonietti, P. Sonnet, C. Sarrazin, N. D’Amelio, ‘The potential of antifungal peptide Sesquin as natural food preservative‘, Biochimie, 2022.
• F. Ramos-Martin, C. Herrera-Leon, N. D’Amelio, ‘Molecular basis of the anticancer, apoptotic and antibacterial activities Bombyx mori Cecropin A‘, Archives of Biochemistry and Biophysics, Volume 715, 2022
• C. Herrera-Leon, F. Ramos-Martin, V. Antonietti, P. Sonnet, N. D’Amelio, ‘The impact of phosphatidylserine exposure on cancer cell membranes on the activity of the anticancer peptide HB43‘, The Febs Journal, Volume 289, 2021
• F. Ramos-Martin, N. D’Amelio, ‘Molecular Basis of the Anticancer and Antibacterial Properties of CecropinXJ Peptide: An In Silico Study‘, International Journal of Molecular Sciences, Volume 22, 2021
• T. Annaval, F. Ramos-Martin, C. Herrera-Leon, M. Adélaïde, V. Antonietti, S. Buchoux, P. Sonnet, C. Sarazin, N. D’Amelio, ‘Antimicrobial Bombinin-like Peptide 3 Selectively Recognizes and Inserts into Bacterial Biomimetic Bilayers in Multiple Steps‘, Journal of Medicinal Chemistry, 2021
• F. Ramos-Martin, C. Herrera-Leon, V. Antonietti, P. Sonnet, C. Sarazin, N. D’Amelio, ‘Antimicrobial Peptide K11 Selectively Recognizes Bacterial Biomimetic Membranes and Acts by Twisting Their Bilayers‘, Pharmaceuticals, Volume 14, 2021
• F. Ramos-Martin, T. Annaval, S. Buchoux, C. Sarazin, N. D’Amelio, ‘ADAPTABLE: a comprehensive web platform of antimicrobial peptides tailored to user’s research‘, Life Science Alliance, 2019
• N. Monnier, AL. Furlan, S. Buchoux, M. Deleu, M. Dauchez, S. Rippa, C. Sarazin, ‘Exploring the Dual Interaction of Natural Rhamnolipids with Plant and Fungal Biomimetic Plasma Membranes through Biophysical Studies‘, International Journal of Molecular Sciences, 2019

GRAMFC

• H. Azizollahi, A. Aarabi, F. Wallois, ‘Effect of structural complexities in head modeling on the accuracy of EEG source localization in neonates‘, Journal of Neural Engineering, 2020
• H. Azizollahi, A. Aarabi, F. Wallois, ‘Effects of uncertainty in head tissue conductivity and complexity on EEG forward modeling in neonates‘, Human Brain Mapping, 2016 – numerical computations performed with MeCS (old platform’s name)

LAMFA

• O. Garnier, ‘Generalization of the Dehornoy-Lafont order complex to categories. Application to exceptional braid groups‘, preprint, 2023

LG2A

• C. Ferreira Funes, B. Bouvier, C. Cézard, C. Fuentealba, A. Jamali, M. Courty, C. Hadad, A. Nguyen Van Nhien, ‘Theoretical and experimental studies of chitin nanocrystals treated with ionic liquid or deep eutectic solvent to afford nanochitosan sheets‘, Journal of Molecular Liquids, Volume 375, 2023
• M. E. Vuillemin, C. Waterlot, A. Verdin, S. Laclef, C. Cézard, D. Lesur, C. Sarazin, D. Courcot, C. Hadad, E. Husson, A. Nguyen Van Nhien, ‘Copper-uptake mediated by an ecofriendly zwitterionic ionic liquid: A new challenge for a cleaner bioeconomy‘, Journal of Environment Sciences, Volume 130, 2023
• S. Rigaud, A. Dosso, D. Lesur, D. Cailleu, D. Mathiron, S. Pilard, C. Cézard, F. Djedaini-Pilard, ‘Mass Spectrometry, Ion Mobility Separation and Molecular Modelling: A Powerful Combination for the Structural Characterisation of Substituted Cyclodextrins Mixtures‘, International Journal of Molecular Sciences, Volume 23, 2022
• J. Bidal, C. Cézard, B. Bouvier, C. Hadad, A. Nguyen Van Nhien, M. Becuwe, ‘Fundamental insight into the interaction between a lithium salt and an inorganic filler for ion mobility using a synergic theoretical-experimental approach‘, Journal of Colloid and Interface Science, Volume 625, 2022
• B. Bouvier, ‘Protein-protein interface topology as a predictor of secondary structure and molecular function using convolutional deep learning’, Journal of Chemical Information and Modeling 61, 3292, 2021.
• G. Huet, M. Araya-Farias, R. Alayoubi, S. Laclef, B. Bouvier, I. Gosselin, C. Cézard, R. Roulard, M. Courty, C. Hadad, E. Husson, C. Sarazin, A. Nguyen Van Nhien, ‘New biobased-zwitterionic ionic liquids: efficiency and biocompatibility for the development of sustainable biorefinery processes’, Green Chemistry 22, 2935, 2020.
• Z. Wang, D. Landy, C. Sizun, C. Cézard, A. Solgadi, C. Przybylski, L. de Chaisemartin, L. Herfindal, G. Barratt, F.-X. Legrand, ‘Cyclodextrin complexation studies as the first step for repurposing of chlorpromazine‘, International Journal of Pharmaceutics 584, 119391, 2020.
• B. Bouvier, ‘Curvature as a collective coordinate in enhanced sampling membrane simulations’, Journal of Chemical Theory and Computation 15, 6551, 2019.
• C. Cézard, P. Sonnet, B. Bouvier, ‘Ironing out pyoverdine’s chromophore structure: serendipity or design?’, Journal of Biological Inorganic Chemistry 24, 659, 2019.

LRCS

• M. Chouchane, A. Franco, ‘Deconvoluting the impacts of the active material skeleton and the inactive phase morphology on the performance of lithium ion battery electrodes‘, Energy Storage Material, Volume 47, 2022
• T. Lombardo, F. Caro, A. C. Ngandjong, J.-B. Hoock, M. Duquesnoy, J.C. Delepine, A. Ponchelet, S. Doison, A. Franco, ‘The ARTISTIC Online Calculator: Exploring the Impact of Lithium-Ion Battery Electrode Manufacturing Parameters Interactively Through Your Browser‘, Batteries & Supercaps, Volume 5, 2022
  • Cover Feature
• T. Lombardo, F. Lambert, R. Russo, F. Zanotto, C. Frayet, G. Toussaint, P. Stevens, M. Becuwe, A. Franco, ‘Experimentally Validated Three-Dimensional Modeling of Organic-Based Sodium-Ion Battery Electrode Manufacturing‘, Batteries & Supercaps, Volume 5, 2022
• A. C. Ngandjong, T. Lombardo, E. N. Primo, M. Chouchane, A. Shoddiev, O. Arcelus, A. Franco, ‘Investigating electrode calendering and its impact on electrochemical performance by means of a new discrete element method model: Towards a digital twin of Li-Ion battery manufacturing‘, Journal of Power Sources, Volume 485, 2021
• M. Chouchane, O. Arcelus, A.Franco, ‘Heterogeneous Solid-Electrolyte Interphase in Graphite Electrodes by 4D-Resolved Computational Simulations‘, Batteries & Supercaps, Volume 4, 2021
• T. Lombardo, J.-B. Hoock, E. N. Primo, A. C. Ngandjong, M. Duquesnoy, A. Franco, ‘Accelerated Optimization Methods for Force-Field Parametrization in Battery Electrode Manufacturing Modeling‘, Battery & Supercaps, Volume 3, 2020
• T. Lombardo, A. C. Ngandjong, A. Belhcen, A. Franco, ‘Carbon-Binder Migration: A Three-Dimensional Drying Model for Lithium-ion Battery Electrodes‘, Energy Storage Materials, Volume 43, 2021
• A. Rucci, A. C. Ngandjong, E. N. Primo, M. Maiza, A. Franco, ‘Tracking variabilities in the simulation of Lithium Ion Battery electrode fabrication and its impact on electrochemical performance‘, Electrochimica Acta, Volume 312, 2019

MIS

• Y. Liu, J. Zhao, C-M. Li, H.Jiang,, K. He, ‘Hybrid Learning with New Value Function for the Maximum Common Induced Subgraph Problem‘, 37th AAAI Conference on Artificial Intelligence, 2023
• S. Li, C-M. Li, M. Luo, J. Coll, D. Habet et al., ‘A New Variable Ordering for In-processing Bounded Variable Elimination in SAT Solvers‘, IJCAI, 2023
• J. Lacmou Zeutouo, V. Kengne Tchendji, J.F. Myoupo, ‘High-performance CGM-based parallel algorithms for minimum cost parenthesizing problem‘, The Journal of Supercomputing 78, 2022 – en collaboration avec l’Université de Dschang (Cameroun)
• E. Arnaud, M. Elbattah, M. Gignon, G. Dequen, ‘NLP-based Prediction of Medical Specialties at Hospital Admission Using Triage Notes‘, IEEE 9th International Conference on Healthcare Informatics (ICHI), 2021
• C-M. Li, F. Xiao, M. Luo, F. Manya, Z. Lu, Y. Li, ‘Clause vivification by unit propagation in CDCL SAT Solvers‘, Artificial Intelligence, Volume 279, 2020
• M. Trimoska, S. Ionica, G. Dequen, ‘A SAT-based Approach for Index Calculus on Binary Elliptic Curves‘, Progress in cryptology – AFRICACRYPT, 2020
• C. Mauger, G. Le Mahec, G. Dequen, ‘Modeling and Evaluation of k-anonymization Metrics‘, Privacy Preserving Artificial Intelligence Workshop of AAAI, 2020

Pepper robots

• E. Bretagne, D. Durand, J. Da Fonseca, E. Serra, ‘Application de la robotique humanoïde au traitement de la douleur‘, 10ème conférence Francophone en Gestion et Ingénierie des Systèmes Hospitaliers, 2020.

unofficial articles

The “unofficial” articles because they do not mention the MatriCS computing platform. However, one of the authors confirms the contribution of the MatriCS platform.

LAMFA

• Gander, Martin J.; Halpern, Laurence; Martin, Véronique. ‘A new algorithm based on factorization for heterogeneous domain decomposition’. Numer. Algorithms 73 (2016), no. 1, 167–195

MIS

• Monika Trimoska, Sorina Ionica et Gilles Dequen, ‘Time-memory analysis for parallel collision search‘
  IACR Transactions on Cryptographic Hardware and Embedded Systems, 2021 (2), 254-274 
• Sulamithe Tsakou et Sorina Ionica, ‘Index calculus attacks on hyperelliptic Jacobians with effective endomorphisms‘, Mathematical Cryptology, 2021 – logiciels utilisés MAGMA
• Monika Trimoska, Gilles Dequen  et Sorina Ionica, ‘Logical cryptanalysis with WDSat‘, Proceedings of the 24th International Conference Theory and Applications of Satisfiability Testing – SAT 2021, volume 12831 of Lecture Notes in Computer Science, pp. 545-561, Springer, 2021
• Monika Trimoska, Sorina Ionica et Gilles Dequen, ‘Parity (XOR) reasoning for the index calculus attack‘, Principles and Practice of Constraint Programming – 26th International Conference CP 2020, volume 12333 of Lecture Notes in Computer Science, pp. 774–790, Springer, 2020
• Sorina Ionica, Pinar Kilicer, Kristin Lauter, Elisa Lorenzo Garcia, Adelina Manzateanu, Maike Massierer and Christelle Vincent, ‘Modular invariants for genus 3 hyperelliptic curves‘, Research in Number Theory, Vol. 5(1), 2019 – used softwares : MAGMA+Sage